Protein language models: an embedding is not a mutation-effect score

<!-- SC_OFF --><div class="md"><p>Disclosure: I run <a href="http://rewire.it">rewire.it</a>, where I published the article linked below.</p> <p>A FASTA sequence does not fully

<!-- SC_OFF --><div class="md"><p>&#x200b;</p> <p>## Abstract</p> <p>Post-training makes language models more decisive without necessarily making them more accurate — and we find

<table> <tr><td> <a href="https://www.reddit.com/r/ChatGPT/comments/1skvcgt/still_a_long_way_from_predicting_protein_binding/"> <img alt="Still a long way from predicting protein

<table> <tr><td> <a href="https://www.reddit.com/r/LocalLLaMA/comments/1s59rct/rys_part_3_llms_think_in_geometry_not_language/"> <img alt="RYS Part 3: LLMs think in geometry, not

<table> <tr><td> <a href="https://www.reddit.com/r/OpenAI/comments/1sw0vcf/stanford_researchers_fed_a_language_model_a_dna/"> <img alt="Stanford researchers fed a language model a

<!-- SC_OFF --><div class="md"><p><strong>Noam Brown</strong> — OpenAI Research Scientist and co-creator of o1, Libratus, and Cicero — sat down with Dwarkesh Patel for a 1h 20m

<table> <tr><td> <a href="https://www.reddit.com/r/singularity/comments/1srx4i1/new_llm_position_bias_benchmark_does_an_llm_keep/"> <img alt="New LLM Position Bias Benchmark: does

<!-- SC_OFF --><div class="md"><p><strong>TL;DR:</strong> My partner and I developed a new mathematical approach to predicting how proteins fold into their three-dimensional